BioNetVisA 2017 workshop
From biological network reconstruction to data visualization and analysis in molecular biology and medicine
12 September 2017
BioNetVisA workshop brings together different actors of network biology from database providers, networks creators, computational biologists, biotech companies involved in data analysis and modeling to experimental biologists, clinicians that use systems biology approaches. The participants are exposed to the different paradigms of network biology and the latest achievements in the field.
The goal of BioNetVisA workshop is to build a discussion around various approaches for biological knowledge formalisation, data integration and analysis; compatibility between different methods and biological networks resources available the field; applicability for concrete research and clinical projects depending on scientific question and type of high-throughput data.
The BioNetVisA workshop aims at identifying bottlenecks and proposing short- and long-term objectives for the community as discussing questions about accessibility of available tools for wide range of user in every-day standalone application in biological and clinical labs. In addition, the possibilities for collective efforts by academic researchers, clinicians, biotech companies and future development directions in the field will be discussed during the round table panel.
Graphical representation of biological knowledge
Molecular interaction and pathway databases
Comprehensive signalling networks
Networks annotation and curation
High-throughput data visualisation, analysis and interpretation in the context of networks
Basic research and clinical application of network biology
Development, curation and maintenance of biological network databases
Data models from interaction to pathway and network, available tools for the integration of new discoveries into existing signalling diagrams. Discussion of curation models from map manager-oriented to community-based update using web-tools and forums.
Cell signalling knowledge representation paradigms
From interaction to single pathways representation to comprehensive signalling networks: discussion of modes of biological processes representation; granularity, coverage, sources of information, annotation modes, cross-citations between different signalling networks resources, etc. Standard data formats, graphical representation standards.
Visualization of data through networks
Paradigms of visualization of different types of high-throughput data on a network map. Data integration with a map. Methods compatibility with different paradigms of signalling networks reconstruction in various databases and resources.
Analytical tools for network biology
Tools for network analysis and manipulation, network modeling, network-based statistics. Studying network activation and inhibition, feedbacks and compensations, synthetic interactions, clinical treatment response and resistance.
Signaling and metabolic network databases
Stephan Gebel (University of Luxembourg, Luxembourg)
A comprehensive map of signalling in Parkinson’s disease
Ronan Fleming (University of Luxembourg, Luxembourg)
MitoMap: an aesthetic mitochondrial biochemical network map
Konstantinos Sidiropoulos (EMBL-EBI, Hinxton, UK)
Reactome: New features for enhanced pathway visualisation
Falk Schreiber (University of Konstanz, Konstanz, Germany)
From static visualisation to immersive analytics of biological networks
Björn Sommer (Monash University, Melbourne, Australia)
Multiscale Modeling and 3D Visualization of spatially-embedded Cytological Networks
10.30-11.00 Coffee break
Platforms and method for analysis of complex biological networks
EMBO keynote lecture
Alfonso Valencia (Spanish National Bioinformatics Institute, Madrid, Spain)
Networks and Co-evolution in the Interpretation of Epigenetic Regulation
Andrei Zinovyev (Institut Curie, Paris, France)
Application of the reduced Google Matrix approach for the analysis of directed biological networks
Ugur Dogrusoz (Bilkent University, Ankara, Turkey)
Interactive web based curation of biological pathways with advanced layout and complexity management support
Aura Ileana Moreno-Vega (Institut Curie, Paris, France)
Characterization of the FGFR3 regulatory network in bladder tumors
Biological networks in drug discovery and toxicology studies
Minoru Kanehisa (Institute for Chemical Research, Kyoto University)
From gene variants to network variants: a new database for understanding diseases and drugs
Mark Ibberson (Swiss Institute of Bioinformatics)
Biomarker discovery in diabetes: A network-based approach
Barry Hardy (Douglas Connect GmbH, Basel, Switzerland)
Integrated Modelling and Testing Strategies supporting Systems Toxicology and
Evidence-based Safety Assessment
Justyna Szostak (Philip Morris International group, Neuchâtel, Switzerland)
Detect Liver Toxicity through Causal Biological Network Model and Computational Algorithm
15.00-15.30 Coffee break
Biological networks modelling in medicine
Gregory Batt (Institut Pasteur, Paris, France)
A multi-scale model for investigating TRAIL resistance in multi-cellular tumor spheroids
Patrick Kemmeren (Princess Maxima Center for Pediatric Oncology, Utrecht, Netherlands)
Exhaustive Petri net modeling to infer mechanisms of genetic interactions
Valeriya Malysheva (Université de Strasbourg, Illkirch, France)
Integration of chromatin structure dynamics in the regulatory network governing cell fate acquisition
Matteo Barberis (University of Amsterdam, Amsterdam, The Netherlands)
GEMMER: GEnome-wide software for Multi-scale Modeling data Extraction and Representation
Closing remarks and discussion
Late abstract submission deadline (for posters only) Submit now!
Notification of accepted late abstracts (for posters only)
Early bird registration deadline Register here
Registration deadline Register here
Abstract submission instructions
Late abstract submission for posters only is possible till August 1st 2017
Number of poster abstracts will be selected for flash poster presentations (3 minutes of topic advertisement).
List of author (the first author is a presenting author)
Abstract text in unstructured format (maximum 300 words)
The link below will take you to the EasyChair submission page. Once logged, click on the 'Submission' tab to start the submission process. Enter authors, title without HTML elements, abstract up to 300 words, keywords, and select up to three relevant topic sessions.
To assist us with creating the abstract booklet, please upload the same abstract as a word document in the section called "Upload Paper" using this TEMPLATE
When the form is adequately filled out, press the 'Submit' button. You will receive an email from the conference "EasyChair". This email is solely a notification that EasyChair for BioNetVisA2014 has received the abstract.
Inna Kuperstein (Institut Curie, France)
Emmanuel Barillot (Institut Curie, France)
Andrei Zinovyev (Institut Curie, France)
Hiroaki Kitano (Okinawa Institute of Science and Technology Graduate University, RIKEN Center for Integrative Medical Sciences, Japan)
Minoru Kanehisa (Institute for Chemical Research, Kyoto University, Japan)
Samik Ghosh (Systems Biology Institute, Tokyo, Japan)
Nicolas Le Novère (Babraham Institute, UK)
Robin Haw (Ontario Institute for Cancer Research, Canada)
Alfonso Valencia (Spanish National Bioinformatics Institute, Madrid, Stain)
Lodewyk Wessels (Netherlands Cancer Institute, Amsterdam, Netherlands)
Patrick Kemmeren (Princess Maxima Center for Pediatric Oncology, Utrecht, Netherands)